The C. elegans Neuronal Gene Expression Map & Network (CeNGEN) is working to establish a comprehensive gene expression atlas of an entire nervous system at single-neuron resolution.

CeNGENApp The results of the scRNA-Seq can be explored through the web app at: https://cengen.shinyapps.io/CengenApp Help documents: Extensive documentation of the website …

We have performed 10x single-cell RNA-Seq on FACS-isolated neurons. Using 100,955 sequenced cells from 17 experiments, 128 neuronal classes have been identified and computationally assigned …

These samples target all neurons, muscle, or intestine, as well as all serotonergic and all dopaminergic neurons. They correspond to SRA samples SRR6238082-SRR6238101 (we did not include the …

The Complete Gene Expression Map of the C. elegans Nervous System The CeNGEN project Data and tools ... Resources ... Publications People Contact

[Preprint] Marc Hammarlund, Oliver Hobert, David M. Miller 3rd, Nenad Sestan, “The CeNGEN Project: The Complete Gene Expression Map of an Entire Nervous System”, Neuron, 2018, doi: …

Datasets 160 bulk samples (covering 41 neuron types) were integrated with the single-cell data (see below) to improve accuracy. Integrated counts contain fewer samples and cell types than either …

How are the displayed TPM expression values calculated? The expression values are in transcripts per million, TPM, as calculated in Packer, et al., 2019. Please note ...

Discovery and analysis of the C. elegans Neuronal Gene Expression Network – CeNGEN The CeNGEN Rshiny app provides multiple routes to explore and analyze single-cell RNA sequence expression …

A. I want to know expression levels for all or a subset of genes in a given neuron. Use Gene Expression by cell type. For all genes, select the neuron of interest on the left drop-down menu and download …